We are searching for two early-stage researchers within the European Industrial Doctorate IMAGE-IN: Imaging infections: integrated, multiscale visualization of infections and host response a Marie Skłodowska-Curie Innovative Training Network (MSCA-ITN-EID) of the European Commission.
POSITION 1: “3D visualization and correlation from different spectroscopic imaging modalities to define the pathogen niche”
We aim in developing improved data analysis algorithms for the 3D visualization of infected cells using 3D image stacks.
For that goal, we will explore combined spectroscopic data sets consisting of fluorescence images, hyperspectral Raman images, realtime intra-vital multimodal imaging (CARS, TPF, FLIM, SHG) and FIB-SEM of infected cells from controlled in-vitro experiments.
Work will be carried out in close collaboration with the University of Aveiro (Prof. Carlos Costa, IEETA), where it is planned a research stay of 6 months.
A 12 months secondment is also planned at the Leibniz- IPHT (Prof. Rainer Heintzmann, FSU), and at ChemoX, a German young start-up with expertise in chemometrics/statistics.
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POSITION 2: “Collaborative Research Framework for Pathomics”
We want to develop a collaborative cloud-based system able to collect pathology imaging studies, extract and indexes features.
This framework aims to allow managing research and educational datasets and the respective annotation process, enriched with tools for extraction of statistical, morphological and spatial metrics/indicators.
The work will be carried out in close collaboration with the University of Aveiro (Prof. Carlos Costa, IEETA), where it is planned a research stay of 6 months.
A second stay of 10 months is planned at the Leibniz- IPHT (Prof. Thomas Bocklitz / Prof. Juergen Popp, FSU), for statistical analysis of multimodal data, and a third of 2 months at University of Coimbra (Prof. Lina Carvalho, FMUC), for image interpretation.
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Applications should be sent electronically to email@example.com.
The application is open until the position is filled.
BMD has a highly specialized team with more than 20 years of experience building computational solutions for healthcare. Our team members have specialized training on the development of ingenious and innovative solutions for bioinformatics and biomedicine, with Ph.D. and MSc in computer science applied to life sciences. BMD team members have large experience building solutions focused on users needs, contributing to complex national and international research projects. We keep things simple, eliminating unnecessary overhead to get straight to the point, and create integrated solutions.